Annotation of co-expression genes

PH01001491G0460's details annotation

1.Annotation

ICBR annotation: acetyl-CoA carboxylase, putative, expressed

Blast result AT1G36160 : 0.00E+00
Blast annotation: acetyl-CoA carboxylase 1

2.Location

Scaffold: PH01001491
Strand: -

RegionStartEnd
gene325027336593
mRNA325027336593
exon325027325320
exon325440327596
exon327680327859
exon328204328414
exon328516328883
exon328969329206
exon329345329688
exon329781330050
exon330136330258
exon330340330417
exon330515330703
exon330769330858
exon330964331074
exon331272331460
exon331622331813
exon332130332216
exon332320332424
exon332528332584
exon332680332754
exon332857332973
exon333061333185
exon333479333721
exon333793334060
exon334578334673
exon334888334980
exon335117335275
exon335356335562
exon335680336593
CDS325264325320
CDS325440327596
CDS327680327859
CDS328204328414
CDS328516328883
CDS328969329206
CDS329345329688
CDS329781330050
CDS330136330258
CDS330340330417
CDS330515330703
CDS330769330858
CDS330964331074
CDS331272331460
CDS331622331813
CDS332130332216
CDS332320332424
CDS332528332584
CDS332680332754
CDS332857332973
CDS333061333185
CDS333479333721
CDS333793334060
CDS334578334673
CDS334888334980
CDS335117335275
CDS335356335562
CDS335680336027

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00289.21Biotin_carb_N39158
PF02786.16CPSase_L_D2204387
PF02785.18Biotin_carb_C434528
PF00364.21Biotin_lipoyl677732
PF08326.11ACC_central7331487
PF01039.21Carboxyl_trans15922142

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Pyruvate metabolismacetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14]ko00620K11262
Propanoate metabolismacetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14]ko00640K11262
Fatty acid biosynthesisacetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14]ko00061K11262

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0003989acetyl-CoA carboxylase activity
GO:0004075biotin carboxylase activity
GO:0005524ATP binding
GO:0006633fatty acid biosynthetic process
GO:0008152metabolic process
GO:0016874ligase activity
GO:0046872metal ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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