PH01001492G0440's details annotation
1.Annotation
ICBR annotation: trehalose-6-phosphate synthase, putative, expressed
Blast result AT1G23870 : 0
Blast annotation: trehalose-phosphatase/synthase 9
2.Location
Scaffold: PH01001492
Strand: -
| Region | Start | End |
| gene | 326523 | 332571 |
| mRNA | 326523 | 332571 |
| exon | 326523 | 326936 |
| exon | 327384 | 327657 |
| exon | 328278 | 329212 |
| exon | 329304 | 329714 |
| exon | 331629 | 332571 |
| CDS | 326622 | 326936 |
| CDS | 327384 | 327657 |
| CDS | 328278 | 329212 |
| CDS | 329304 | 329714 |
| CDS | 331629 | 331634 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00982.20 | Glyco_transf_20 | 138 | 333 |
| PF02358.15 | Trehalose_PPase | 383 | 617 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15;EC:3.1.3.12] | ko00500 | K16055 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005992 | trehalose biosynthetic process |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.