PH01001495G0300's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G27540 : 8.50E-49
Blast annotation: prenylated RAB acceptor 1.H
2.Location
Scaffold: PH01001495
Strand: -
| Region | Start | End |
| gene | 243714 | 246145 |
| mRNA | 243714 | 246145 |
| exon | 243714 | 244127 |
| exon | 245284 | 245423 |
| exon | 245542 | 246145 |
| CDS | 244075 | 244127 |
| CDS | 245284 | 245423 |
| CDS | 245542 | 245972 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001092 | CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases membrane coat, 4-alpha-glucanotransferase activity, starch_binding |
| coexpression network | CFinderM001155 | UDP-glucose:glycoprotein_glucosyltransferase_activity nuclear pore, binding, protein transporter activity, Proteasome protein glycosylation, |
| coexpression network | CFinderM001846 | rRNA modification, rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, tRNA aminoacylation, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001892 | phenylalanyl-tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation, phenylalanine-tRNA ligase activity, WRKY Transcription_Regulator(from PlantTFDB) tRNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03208.18 | PRA1 | 106 | 224 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.