PH01001495G0400's details annotation
1.Annotation
ICBR annotation: frigida, putative, expressed
Blast result AT5G48385 : 3.00E-131
Blast annotation: FRIGIDA-like protein
2.Location
Scaffold: PH01001495
Strand: +
| Region | Start | End |
| gene | 313501 | 317176 |
| mRNA | 313501 | 317176 |
| exon | 313501 | 315772 |
| exon | 316679 | 317176 |
| CDS | 314722 | 315772 |
| CDS | 316679 | 316944 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000008 | TKL-Pl-4 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) transferase activity, transferring phosphorus-containing groups, protein phosphorylation, Spliceosome protein kinase activity, ATP binding, protein serine/threonine kinase activity, exocyst, chloroplast, |
| coexpression network | CFinderM000101 | RLK-Pelle_RLCK-VIIa-2 (from iTAK) response to heat, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07899.10 | Frigida | 163 | 457 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.