PH01001500G0110's details annotation
1.Annotation
ICBR annotation: RGH2B, putative, expressed
Blast result AT4G23810 : 6.80E-28
Blast annotation: WRKY family transcription factor
2.Location
Scaffold: PH01001500
Strand: +
| Region | Start | End |
| gene | 95654 | 101820 |
| mRNA | 95654 | 101820 |
| exon | 95654 | 96431 |
| exon | 96596 | 97237 |
| exon | 98527 | 100534 |
| exon | 100631 | 100756 |
| exon | 100861 | 101145 |
| exon | 101249 | 101350 |
| exon | 101447 | 101820 |
| CDS | 96368 | 96431 |
| CDS | 96596 | 97237 |
| CDS | 98527 | 100534 |
| CDS | 100631 | 100756 |
| CDS | 100861 | 101145 |
| CDS | 101249 | 101350 |
| CDS | 101447 | 101726 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | WRKY |
| Transcription_Regulator(from PlantTFDB) | WRKY |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 237 | 350 |
| PF03106.14 | WRKY | 927 | 986 |
| PF03106.14 | WRKY | 1056 | 1115 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043531 | ADP binding |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.