Annotation of co-expression genes

PH01001502G0210's details annotation

1.Annotation

ICBR annotation: inactive receptor kinase At2g26730 precursor, putative, expressed

Blast result AT5G58300 : 2.00E-104
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01001502
Strand: -

RegionStartEnd
gene167490171044
mRNA167490171044
exon167490167551
exon167938171044
CDS167535167551
CDS167938169225

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000168RLK-Pelle_LRR-III (from iTAK)
protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
RLK-Pelle_LRR-I-2 (from iTAK)
ATP binding,
identical protein binding,
negative regulation of catalytic activity,
coexpression networkCFinderM001056RLK-Pelle_LRR-III (from iTAK)
RLK-Pelle_URK-1 (from iTAK)
protein phosphorylation,
transferase activity, transferring phosphorus-containing groups,
protein kinase activity,
ATP binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23268
PF13855.5LRR_884133
PF00069.24Pkinase346429

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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