PH01001506G0290's details annotation
1.Annotation
ICBR annotation: FGGY family of carbohydrate kinases, putative, expressed
Blast result AT4G30310 : 1.10E-47
Blast annotation: FGGY family of carbohydrate kinase
2.Location
Scaffold: PH01001506
Strand: +
| Region | Start | End |
| gene | 149443 | 155443 |
| mRNA | 149443 | 155443 |
| exon | 149443 | 151038 |
| exon | 152494 | 152818 |
| exon | 153214 | 153322 |
| exon | 153674 | 153793 |
| exon | 153877 | 153997 |
| exon | 154483 | 154606 |
| exon | 154856 | 155443 |
| CDS | 150881 | 151038 |
| CDS | 152494 | 152818 |
| CDS | 153214 | 153322 |
| CDS | 153674 | 153793 |
| CDS | 153877 | 153997 |
| CDS | 154483 | 154606 |
| CDS | 154856 | 154867 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 82 | 128 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.