PH01001507G0510's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G55630 : 2.00E-149
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01001507
Strand: +
| Region | Start | End |
| gene | 284709 | 293102 |
| mRNA | 284709 | 293102 |
| exon | 284709 | 285692 |
| exon | 285760 | 285819 |
| exon | 286510 | 286644 |
| exon | 286842 | 286891 |
| exon | 290990 | 293102 |
| CDS | 285216 | 285692 |
| CDS | 285760 | 285819 |
| CDS | 286510 | 286644 |
| CDS | 286842 | 286891 |
| CDS | 290990 | 292217 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 324 | 369 |
| PF13041.5 | PPR_2 | 427 | 474 |
| PF01535.19 | PPR | 502 | 530 |
| PF13041.5 | PPR_2 | 532 | 580 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.