PH01001508G0060's details annotation
1.Annotation
ICBR annotation: PTEN, putative, expressed
Blast result AT3G19420 : 5.70E-58
Blast annotation: PTEN 2
2.Location
Scaffold: PH01001508
Strand: -
| Region | Start | End |
| gene | 58018 | 67023 |
| mRNA | 58018 | 67023 |
| exon | 58018 | 58991 |
| exon | 59320 | 59389 |
| exon | 59609 | 59739 |
| exon | 61512 | 61558 |
| exon | 62182 | 62271 |
| exon | 62751 | 62769 |
| exon | 62923 | 62988 |
| exon | 63767 | 63823 |
| exon | 63914 | 64015 |
| exon | 64509 | 64565 |
| exon | 65436 | 67023 |
| CDS | 58884 | 58991 |
| CDS | 59320 | 59389 |
| CDS | 59609 | 59739 |
| CDS | 61512 | 61558 |
| CDS | 62182 | 62271 |
| CDS | 62751 | 62769 |
| CDS | 62923 | 62988 |
| CDS | 63767 | 63823 |
| CDS | 63914 | 64015 |
| CDS | 64509 | 64565 |
| CDS | 65436 | 65969 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.