PH01001510G0310's details annotation
1.Annotation
ICBR annotation: miro, putative, expressed
Blast result AT5G17060 : 5.80E-93
Blast annotation: ADP-ribosylation factor B1B
2.Location
Scaffold: PH01001510
Strand: +
| Region | Start | End |
| gene | 237754 | 241141 |
| mRNA | 237754 | 241141 |
| exon | 237754 | 238420 |
| exon | 239091 | 239181 |
| exon | 239313 | 239428 |
| exon | 239871 | 239930 |
| exon | 240031 | 240096 |
| exon | 240180 | 240248 |
| exon | 240446 | 241141 |
| CDS | 238364 | 238420 |
| CDS | 239091 | 239181 |
| CDS | 239313 | 239428 |
| CDS | 239871 | 239930 |
| CDS | 240031 | 240096 |
| CDS | 240180 | 240248 |
| CDS | 240446 | 240634 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00025.20 | Arf | 6 | 176 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
| GO:0007264 | small GTPase mediated signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.