Annotation of co-expression genes

PH01001513G0020's details annotation

1.Annotation

ICBR annotation: 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed

Blast result AT3G13930 : 1.20E-75
Blast annotation: Dihydrolipoamide acetyltransferase, long form protein

2.Location

Scaffold: PH01001513
Strand: +

RegionStartEnd
gene660211499
mRNA660211499
exon66026771
exon71707265
exon76077700
exon84858555
exon86408737
exon91409180
exon1043110486
exon1060110675
exon1078410876
exon1099611244
exon1132611499
CDS67366771
CDS71707265
CDS76077700
CDS84858555
CDS86408737
CDS91409180
CDS1043110486
CDS1060110675
CDS1078410876
CDS1099611244
CDS1132611457

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00364.21Biotin_lipoyl152224
PF02817.16E3_binding289324

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016746transferase activity, transferring acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.