PH01001513G0230's details annotation
1.Annotation
ICBR annotation: transcription factor jumonji, putative
Blast result AT1G11950 : 1.00E-98
Blast annotation: Transcription factor jumonji (jmjC) domain-containing protein
2.Location
Scaffold: PH01001513
Strand: -
| Region | Start | End |
| gene | 152825 | 165606 |
| mRNA | 152825 | 165606 |
| exon | 152825 | 153120 |
| exon | 153951 | 154021 |
| exon | 154258 | 154377 |
| exon | 154493 | 154578 |
| exon | 154663 | 154735 |
| exon | 155216 | 155959 |
| exon | 156285 | 156757 |
| exon | 156964 | 157132 |
| exon | 157347 | 157666 |
| exon | 157987 | 158191 |
| exon | 158635 | 159504 |
| exon | 161390 | 161719 |
| exon | 162361 | 163021 |
| exon | 163110 | 163173 |
| exon | 163546 | 163678 |
| exon | 163759 | 163852 |
| exon | 164069 | 164199 |
| exon | 164498 | 164716 |
| exon | 164805 | 164855 |
| exon | 165345 | 165606 |
| CDS | 153072 | 153120 |
| CDS | 153951 | 154021 |
| CDS | 154258 | 154377 |
| CDS | 154493 | 154578 |
| CDS | 154663 | 154735 |
| CDS | 155216 | 155959 |
| CDS | 156285 | 156757 |
| CDS | 156964 | 157132 |
| CDS | 157347 | 157666 |
| CDS | 157987 | 158191 |
| CDS | 158635 | 159504 |
| CDS | 161390 | 161719 |
| CDS | 162361 | 163021 |
| CDS | 163110 | 163173 |
| CDS | 163546 | 163678 |
| CDS | 163759 | 163852 |
| CDS | 164069 | 164199 |
| CDS | 164498 | 164716 |
| CDS | 164805 | 164855 |
| CDS | 165345 | 165404 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000730 | histone_methylation histone_lysine_methylation Lysine_degradation CMGC_DYRK-PRP4 (from iTAK) Jumonji Transcription_Regulator(from iTAK) SET Transcription_Regulator(from iTAK) endoplasmic reticulum, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08284.10 | RVP_2 | 607 | 695 |
| PF02373.21 | JmjC | 1474 | 1570 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.