Annotation of co-expression genes

PH01001515G0120's details annotation

1.Annotation

ICBR annotation: prefoldin subunit, putative, expressed

Blast result AT2G07340 : 2.20E-50
Blast annotation: PREFOLDIN 1

2.Location

Scaffold: PH01001515
Strand: -

RegionStartEnd
gene8407587844
mRNA8407587844
exon8407584516
exon8462684710
exon8482184827
exon8630287844
CDS8440384516
CDS8462684710
CDS8482184827
CDS8630286395

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000685vacuolar proton-transporting V-type ATPase complex,
prefoldin complex,
RLK-Pelle_L-LEC (from iTAK)
Phagosome
Oxidative_phosphorylation
proton transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01920.19Prefoldin_2 C12115

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006457protein folding
GO:0016272prefoldin complex
GO:0051082unfolded protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.