Annotation of co-expression genes

PH01001528G0160's details annotation

1.Annotation

ICBR annotation: dolichyl-phosphate beta-glycosyltransferase, putative, expressed

Blast result AT2G39630 : 2.00E-115
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein

2.Location

Scaffold: PH01001528
Strand: -

RegionStartEnd
gene101898107104
mRNA101898107104
exon101898103424
exon103553103617
exon103704103787
exon103886104014
exon104121104210
exon104321104455
exon105806105851
exon106025106131
exon106219107104
CDS103238103424
CDS103553103617
CDS103704103787
CDS103886104014
CDS104121104210
CDS104321104455
CDS105806105851
CDS106025106131
CDS106219106608

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001354STE_STE20-YSK (from iTAK)
GT2 GlycosylTransferases
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
N-Glycan_biosynthesis
endoplasmic reticulum membrane,
membrane coat,
microtubule associated complex,
coexpression networkCFinderM001369GT2 GlycosylTransferases
N-Glycan_biosynthesis
regulation of Rab GTPase activity,
nucleosome assembly,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00535.25Glycos_transf_286205

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
N-Glycan biosynthesisdolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117]ko00510K00729

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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