PH01001533G0340's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G13345 : 9.90E-61
Blast annotation: Serinc-domain containing serine and sphingolipid biosynthesis protein
2.Location
Scaffold: PH01001533
Strand: +
| Region | Start | End |
| gene | 237479 | 242145 |
| mRNA | 237479 | 242145 |
| exon | 237479 | 238209 |
| exon | 239623 | 239888 |
| exon | 240303 | 240332 |
| exon | 240422 | 240511 |
| exon | 240606 | 240767 |
| exon | 240856 | 240929 |
| exon | 240980 | 241109 |
| exon | 241252 | 241323 |
| exon | 241404 | 241537 |
| exon | 241927 | 242145 |
| CDS | 238206 | 238209 |
| CDS | 239623 | 239888 |
| CDS | 240303 | 240332 |
| CDS | 240422 | 240511 |
| CDS | 240606 | 240767 |
| CDS | 240856 | 240929 |
| CDS | 240980 | 241109 |
| CDS | 241252 | 241323 |
| CDS | 241404 | 241537 |
| CDS | 241927 | 242017 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000047 | isomerase activity, Brassinosteroid_biosynthesis carbohydrate metabolic process, carbohydrate binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03348.14 | Serinc | 130 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.