PH01001537G0160's details annotation
1.Annotation
ICBR annotation: nucleotidyltransferase, putative, expressed
Blast result AT3G61690 : 0.00E+00
Blast annotation: nucleotidyltransferases
2.Location
Scaffold: PH01001537
Strand: +
| Region | Start | End |
| gene | 105358 | 113539 |
| mRNA | 105358 | 113539 |
| exon | 105358 | 106093 |
| exon | 107038 | 107226 |
| exon | 107803 | 107895 |
| exon | 108113 | 108295 |
| exon | 108368 | 108470 |
| exon | 108560 | 108745 |
| exon | 110279 | 113539 |
| CDS | 105893 | 106093 |
| CDS | 107038 | 107226 |
| CDS | 107803 | 107895 |
| CDS | 108113 | 108295 |
| CDS | 108368 | 108470 |
| CDS | 108560 | 108745 |
| CDS | 110279 | 112716 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001574 | SBP Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016779 | nucleotidyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.