PH01001538G0330's details annotation
1.Annotation
ICBR annotation: transcription factor like protein, putative, expressed
Blast result AT3G58630 : 1.30E-20
Blast annotation: sequence-specific DNA binding transcription factors
2.Location
Scaffold: PH01001538
Strand: -
| Region | Start | End |
| gene | 231626 | 234572 |
| mRNA | 231626 | 234572 |
| exon | 231626 | 232647 |
| exon | 233090 | 233167 |
| exon | 233868 | 234572 |
| CDS | 231730 | 232647 |
| CDS | 233090 | 233167 |
| CDS | 233868 | 233918 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Trihelix |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13837.5 | Myb_DNA-bind_4 | 45 | 92 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.