Annotation of co-expression genes

PH01001538G0330's details annotation

1.Annotation

ICBR annotation: transcription factor like protein, putative, expressed

Blast result AT3G58630 : 1.30E-20
Blast annotation: sequence-specific DNA binding transcription factors

2.Location

Scaffold: PH01001538
Strand: -

RegionStartEnd
gene231626234572
mRNA231626234572
exon231626232647
exon233090233167
exon233868234572
CDS231730232647
CDS233090233167
CDS233868233918

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Trihelix

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13837.5Myb_DNA-bind_44592

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.