Annotation of co-expression genes

PH01001539G0130's details annotation

1.Annotation

ICBR annotation: guanine nucleotide exchange family protein, putative, expressed

Blast result AT4G38200 : 0.00E+00
Blast annotation: SEC7-like guanine nucleotide exchange family protein

2.Location

Scaffold: PH01001539
Strand: +

RegionStartEnd
gene6709275315
mRNA6709275315
exon6709268000
exon6909469411
exon6962769963
exon7006570487
exon7056270854
exon7093870989
exon7111971211
exon7167672178
exon7229772618
exon7276873116
exon7322173870
exon7407475315
CDS6743568000
CDS6909469411
CDS6962769963
CDS7006570487
CDS7056270854
CDS7093870989
CDS7111971211
CDS7167672178
CDS7229772618
CDS7276873116
CDS7322173870
CDS7407474679

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16213.4DCB266
PF12783.6Sec7_N135292
PF01369.19Sec7403584
PF09324.9DUF1981909991
PF16206.4Mon2_C10681135

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005086ARF guanyl-nucleotide exchange factor activity
GO:0005488binding
GO:0032012regulation of ARF protein signal transduction

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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