PH01001539G0160's details annotation
1.Annotation
ICBR annotation: Mad3/BUB1 homology region 1 domain containing protein, expressed
Blast result AT2G33560 : 2.00E-100
Blast annotation: BUB1-related (BUB1: budding uninhibited by benzymidazol 1)
2.Location
Scaffold: PH01001539
Strand: -
| Region | Start | End |
| gene | 87089 | 90514 |
| mRNA | 87089 | 90514 |
| exon | 87089 | 87538 |
| exon | 87620 | 87700 |
| exon | 87803 | 87885 |
| exon | 87993 | 88294 |
| exon | 88375 | 88441 |
| exon | 88527 | 88608 |
| exon | 89452 | 89609 |
| exon | 89691 | 89835 |
| exon | 89980 | 90039 |
| exon | 90170 | 90514 |
| CDS | 87478 | 87538 |
| CDS | 87620 | 87700 |
| CDS | 87803 | 87885 |
| CDS | 87993 | 88294 |
| CDS | 88375 | 88441 |
| CDS | 88527 | 88608 |
| CDS | 89452 | 89609 |
| CDS | 89691 | 89835 |
| CDS | 89980 | 90039 |
| CDS | 90170 | 90393 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000682 | DNA_replication Ino80_complex DNA_replication,_Okazaki_fragment_processing nucleoside binding, single-stranded_DNA-dependent_ATPase_activity 5'-flap_endonuclease_activity ATP-dependent_5'-3'_DNA_helicase_activity DNA helicase activity, nucleobase-containing compound metabolic process, DNA-directed DNA polymerase activity, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08311.11 | Mad3_BUB1_I | 73 | 194 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.