PH01001540G0210's details annotation 1.Annotation ICBR annotation: helicase conserved C-terminal domain containing protein, expressed
Blast result AT3G12810 : 0.00E+00 Blast annotation: SNF2 domain-containing protein / helicase domain-containing protein 2.Location Scaffold: PH01001540 Strand: - Region | Start | End | gene | 158392 | 174759 | mRNA | 158392 | 174759 | exon | 158392 | 158957 | exon | 159144 | 159232 | exon | 161162 | 161529 | exon | 161708 | 162177 | exon | 162939 | 163677 | exon | 163992 | 164053 | exon | 164941 | 165005 | exon | 165147 | 167045 | exon | 167227 | 168433 | exon | 168511 | 168573 | exon | 169465 | 169533 | exon | 169702 | 169737 | exon | 171270 | 171388 | exon | 172498 | 172675 | exon | 173378 | 173690 | exon | 173721 | 173857 | exon | 174117 | 174759 | CDS | 158919 | 158957 | CDS | 159144 | 159232 | CDS | 161162 | 161529 | CDS | 161708 | 162177 | CDS | 162939 | 163677 | CDS | 163992 | 164053 | CDS | 164941 | 165005 | CDS | 165147 | 167045 | CDS | 167227 | 168433 | CDS | 168511 | 168573 | CDS | 169465 | 169533 | CDS | 169702 | 169737 | CDS | 171270 | 171388 | CDS | 172498 | 172675 | CDS | 173378 | 173690 | CDS | 173721 | 173857 | CDS | 174117 | 174122 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000393 | protein_prenylation SNF2 Transcription_Regulator(from iTAK) helicase activity, protein prenyltransferase activity, RNA_degradation ubiquitin-dependent protein catabolic process,
| coexpression network | CFinderM000545 | binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding,
| coexpression network | CFinderM000891 | cellular protein modification process, Ubiquitin_mediated_proteolysis binding, ubiquitin-protein ligase activity, SNF2 Transcription_Regulator(from iTAK) RNA metabolic process, intracellular,
|
5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family Category | Family | Transcription_Regulator(from iTAK) | SNF2 |
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF00176.22 | SNF2_N | 454 | 702 | PF00271.30 | Helicase_C | 961 | 1073 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0003676 | nucleic acid binding | GO:0003677 | DNA binding | GO:0004386 | helicase activity | GO:0005524 | ATP binding |
|