PH01001541G0060's details annotation
1.Annotation
ICBR annotation: ribosomal protein L30 containing protein, expressed
Blast result AT5G55140 : 1.10E-35
Blast annotation: ribosomal protein L30 family protein
2.Location
Scaffold: PH01001541
Strand: -
| Region | Start | End |
| gene | 36094 | 39007 |
| mRNA | 36094 | 39007 |
| exon | 36094 | 37064 |
| exon | 38011 | 39007 |
| CDS | 36932 | 37064 |
| CDS | 38011 | 38360 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000073 | BES1 Transcription_Regulator(from PlantTFDB) large ribosomal subunit, C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00327.19 | Ribosomal_L30 | 22 | 71 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L30 | ko03011 | K02907 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0006412 | translation |
| GO:0015934 | large ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.