PH01001542G0200's details annotation
1.Annotation
ICBR annotation: OsSAUR6 - Auxin-responsive SAUR gene family member, expressed
Blast result AT1G56150 : 5.30E-19
Blast annotation: SAUR-like auxin-responsive protein family
2.Location
Scaffold: PH01001542
Strand: +
| Region | Start | End |
| gene | 122475 | 123846 |
| mRNA | 122475 | 123846 |
| exon | 122475 | 123846 |
| CDS | 122602 | 122931 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000167 | riboflavin synthase activity, Riboflavin_metabolism vesicle docking involved in exocytosis, riboflavin biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02519.13 | Auxin_inducible | 7 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | SAUR family protein | ko04075 | K14488 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.