Annotation of co-expression genes

PH01001542G0400's details annotation

1.Annotation

ICBR annotation: glyoxalase family protein, putative, expressed

Blast result AT1G06570 : 4.00E-147
Blast annotation: phytoene desaturation 1

2.Location

Scaffold: PH01001542
Strand: -

RegionStartEnd
gene226981229804
mRNA226981229804
exon226981227384
exon227806229804
CDS227198227384
CDS227806228923

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14696.5Glyoxalase_5115182
PF00903.24Glyoxalase209365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Tyrosine metabolism4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]ko00350K00457
Phenylalanine metabolism4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]ko00360K00457
Ubiquinone and other terpenoid-quinone biosynthesis4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]ko00130K00457

10.Gene Ontology

GO AccessionGO Annotation
GO:00038684-hydroxyphenylpyruvate dioxygenase activity
GO:0009072aromatic amino acid family metabolic process
GO:0016701oxidoreductase activity, acting on single donors with incorporation of molecular oxygen
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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