PH01001546G0030's details annotation
1.Annotation
ICBR annotation: thioredoxin, putative, expressed
Blast result AT3G51030 : 7.00E-40
Blast annotation: thioredoxin H-type 1
2.Location
Scaffold: PH01001546
Strand: +
| Region | Start | End |
| gene | 20216 | 23363 |
| mRNA | 20216 | 23363 |
| exon | 20216 | 20431 |
| exon | 21642 | 21764 |
| exon | 21841 | 23363 |
| CDS | 20342 | 20431 |
| CDS | 21642 | 21764 |
| CDS | 21841 | 21984 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001249 | glycerol ether metabolic process, cell redox homeostasis, protein disulfide oxidoreductase activity, electron carrier activity, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00085.19 | Thioredoxin | 9 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006662 | glycerol ether metabolic process |
| GO:0009055 | electron carrier activity |
| GO:0015035 | protein disulfide oxidoreductase activity |
| GO:0045454 | cell redox homeostasis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.