PH01001551G0360's details annotation
1.Annotation
ICBR annotation: OsSub62 - Putative Subtilisin homologue, expressed
Blast result AT4G10540 : 0.00E+00
Blast annotation: Subtilase family protein
2.Location
Scaffold: PH01001551
Strand: +
| Region | Start | End |
| gene | 226030 | 236337 |
| mRNA | 226030 | 236337 |
| exon | 226030 | 226211 |
| exon | 226417 | 226508 |
| exon | 227549 | 227646 |
| exon | 227720 | 227875 |
| exon | 229700 | 230328 |
| exon | 231213 | 231283 |
| exon | 231451 | 231699 |
| exon | 233244 | 233370 |
| exon | 234212 | 234304 |
| exon | 235365 | 235563 |
| exon | 235691 | 236337 |
| CDS | 226101 | 226211 |
| CDS | 226417 | 226508 |
| CDS | 227549 | 227646 |
| CDS | 227720 | 227875 |
| CDS | 229700 | 230328 |
| CDS | 231213 | 231283 |
| CDS | 231451 | 231699 |
| CDS | 233244 | 233370 |
| CDS | 234212 | 234304 |
| CDS | 235365 | 235563 |
| CDS | 235691 | 236241 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05922.15 | Inhibitor_I9 | 39 | 111 |
| PF00082.21 | Peptidase_S8 | 142 | 637 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
| GO:0042802 | identical protein binding |
| GO:0043086 | negative regulation of catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.