PH01001553G0280's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G48060 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01001553
Strand: +
| Region | Start | End |
| gene | 212057 | 226715 |
| mRNA | 212057 | 226715 |
| exon | 212057 | 212960 |
| exon | 213286 | 214076 |
| exon | 214273 | 214513 |
| exon | 214703 | 214807 |
| exon | 214917 | 216664 |
| exon | 216713 | 217465 |
| exon | 217585 | 217980 |
| exon | 218706 | 218864 |
| exon | 219845 | 220360 |
| exon | 220445 | 220586 |
| exon | 224401 | 224589 |
| exon | 225384 | 225602 |
| exon | 226242 | 226715 |
| CDS | 212891 | 212960 |
| CDS | 213286 | 214076 |
| CDS | 214273 | 214513 |
| CDS | 214703 | 214807 |
| CDS | 214917 | 216664 |
| CDS | 216713 | 217465 |
| CDS | 217585 | 217980 |
| CDS | 218706 | 218864 |
| CDS | 219845 | 220360 |
| CDS | 220445 | 220586 |
| CDS | 224401 | 224589 |
| CDS | 225384 | 225602 |
| CDS | 226242 | 226468 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001017 | calcium-dependent cysteine-type endopeptidase activity, mechanically-gated_ion_channel_activity RNA_degradation |
| coexpression network | CFinderM001457 | mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity |
| coexpression network | CFinderM001546 | calcium-dependent cysteine-type endopeptidase activity, mechanically-gated_ion_channel_activity GH17 Glycoside_Hydrolases CBM43 Carbohydrate-Binding_Modules MYB-related Transcription_Regulator(from iTAK) endoplasmic reticulum, integral to membrane, |
| coexpression network | CFinderM001782 | ubiquitin-dependent protein catabolic process, ubiquitin thiolesterase activity, mechanically-gated_ion_channel_activity SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12166.7 | Piezo_RRas_bdg | 1341 | 1641 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008381 | mechanically-gated ion channel activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.