PH01001556G0450's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G44710 : 1.50E-34
Blast annotation: -
2.Location
Scaffold: PH01001556
Strand: +
| Region | Start | End |
| gene | 296293 | 299492 |
| mRNA | 296293 | 299492 |
| exon | 296293 | 297585 |
| exon | 297691 | 297771 |
| exon | 298443 | 298484 |
| exon | 299107 | 299492 |
| CDS | 297362 | 297585 |
| CDS | 297691 | 297771 |
| CDS | 298443 | 298484 |
| CDS | 299107 | 299197 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000369 | translational elongation, Ribosome Ribosome structural constituent of ribosome, intracellular, ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08293.10 | MRP-S33 | 21 | 93 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.