PH01001557G0400's details annotation
1.Annotation
ICBR annotation: GDSL-like lipase/acylhydrolase, putative, expressed
Blast result AT5G03820 : 6.30E-58
Blast annotation: GDSL-like Lipase/Acylhydrolase family protein
2.Location
Scaffold: PH01001557
Strand: -
| Region | Start | End |
| gene | 261753 | 264083 |
| mRNA | 261753 | 264083 |
| exon | 261753 | 261933 |
| exon | 262167 | 262400 |
| exon | 262498 | 262634 |
| exon | 262720 | 264083 |
| CDS | 261901 | 261933 |
| CDS | 262167 | 262400 |
| CDS | 262498 | 262634 |
| CDS | 262720 | 262966 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000689 | hydrolase activity, acting on ester bonds, lipid metabolic process, hydrolase activity, RLK-Pelle_Extensin (from iTAK) lipase activity, lipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
| GO:0016298 | lipase activity |
| GO:0016787 | hydrolase activity |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.