PH01001561G0480's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, expressed
Blast result AT5G64200 : 1.80E-35
Blast annotation: ortholog of human splicing factor SC35
2.Location
Scaffold: PH01001561
Strand: +
| Region | Start | End |
| gene | 305946 | 310404 |
| mRNA | 305946 | 310404 |
| exon | 305946 | 306528 |
| exon | 307004 | 307082 |
| exon | 307177 | 307256 |
| exon | 307346 | 307412 |
| exon | 307977 | 308048 |
| exon | 308655 | 308826 |
| exon | 309368 | 309429 |
| exon | 310247 | 310404 |
| CDS | 306417 | 306528 |
| CDS | 307004 | 307082 |
| CDS | 307177 | 307256 |
| CDS | 307346 | 307412 |
| CDS | 307977 | 308048 |
| CDS | 308655 | 308826 |
| CDS | 309368 | 309429 |
| CDS | 310247 | 310337 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 39 | 99 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.