PH01001562G0470's details annotation
1.Annotation
ICBR annotation: mRNA-capping enzyme, putative, expressed
Blast result AT3G09100 : 1.20E-35
Blast annotation: mRNA capping enzyme family protein
2.Location
Scaffold: PH01001562
Strand: -
| Region | Start | End |
| gene | 310000 | 313647 |
| mRNA | 310000 | 313647 |
| exon | 310000 | 310586 |
| exon | 310669 | 310831 |
| exon | 311471 | 311520 |
| exon | 311749 | 311811 |
| exon | 312644 | 313647 |
| CDS | 310332 | 310586 |
| CDS | 310669 | 310831 |
| CDS | 311471 | 311520 |
| CDS | 311749 | 311811 |
| CDS | 312644 | 313081 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01331.18 | mRNA_cap_enzyme | 178 | 306 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004484 | mRNA guanylyltransferase activity |
| GO:0006370 | 7-methylguanosine mRNA capping |
| GO:0006397 | mRNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.