PH01001563G0280's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G73390 : 2.00E-128
Blast annotation: Endosomal targeting BRO1-like domain-containing protein
2.Location
Scaffold: PH01001563
Strand: +
| Region | Start | End |
| gene | 235117 | 240674 |
| mRNA | 235117 | 240674 |
| exon | 235117 | 236738 |
| exon | 236841 | 236915 |
| exon | 237019 | 237077 |
| exon | 237182 | 237317 |
| exon | 237446 | 237542 |
| exon | 237642 | 237708 |
| exon | 237952 | 238050 |
| exon | 239247 | 239336 |
| exon | 239577 | 239695 |
| exon | 240329 | 240674 |
| CDS | 236483 | 236738 |
| CDS | 236841 | 236915 |
| CDS | 237019 | 237077 |
| CDS | 237182 | 237317 |
| CDS | 237446 | 237542 |
| CDS | 237642 | 237708 |
| CDS | 237952 | 238050 |
| CDS | 239247 | 239336 |
| CDS | 239577 | 239695 |
| CDS | 240329 | 240422 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03097.17 | BRO1 | 91 | 331 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.