PH01001567G0120's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT1G16890 : 3.50E-83
Blast annotation: ubiquitin-conjugating enzyme 36
2.Location
Scaffold: PH01001567
Strand: -
| Region | Start | End |
| gene | 74211 | 80038 |
| mRNA | 74211 | 80038 |
| exon | 74211 | 75139 |
| exon | 75237 | 75334 |
| exon | 76028 | 76093 |
| exon | 76175 | 76216 |
| exon | 76543 | 76616 |
| exon | 76690 | 76731 |
| exon | 78478 | 78536 |
| exon | 79505 | 79591 |
| exon | 79700 | 79727 |
| exon | 79859 | 80038 |
| CDS | 75102 | 75139 |
| CDS | 75237 | 75334 |
| CDS | 76028 | 76093 |
| CDS | 76175 | 76216 |
| CDS | 76543 | 76616 |
| CDS | 76690 | 76731 |
| CDS | 78478 | 78536 |
| CDS | 79505 | 79591 |
| CDS | 79700 | 79727 |
| CDS | 79859 | 79894 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000833 | 7-methylguanosine mRNA capping, mRNA processing, mRNA guanylyltransferase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
| coexpression network | CFinderM000834 | Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 9 | 144 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 N [EC:6.3.2.19] | ko04120 | K10580 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.