PH01001567G0410's details annotation
1.Annotation
ICBR annotation: tRNA-binding arm, putative, expressed
Blast result AT1G79830 : 0.00E+00
Blast annotation: golgin candidate 5
2.Location
Scaffold: PH01001567
Strand: +
| Region | Start | End |
| gene | 267054 | 277434 |
| mRNA | 267054 | 277434 |
| exon | 267054 | 267810 |
| exon | 267973 | 268062 |
| exon | 268384 | 269564 |
| exon | 270360 | 270431 |
| exon | 270676 | 270750 |
| exon | 271306 | 271359 |
| exon | 271809 | 271910 |
| exon | 272534 | 272581 |
| exon | 273034 | 273318 |
| exon | 273517 | 273576 |
| exon | 273658 | 273741 |
| exon | 273884 | 273949 |
| exon | 274222 | 274320 |
| exon | 274463 | 274681 |
| exon | 275143 | 275230 |
| exon | 275328 | 275551 |
| exon | 276312 | 276371 |
| exon | 276443 | 276556 |
| exon | 277280 | 277434 |
| CDS | 267666 | 267810 |
| CDS | 267973 | 268062 |
| CDS | 268384 | 269564 |
| CDS | 270360 | 270431 |
| CDS | 270676 | 270750 |
| CDS | 271306 | 271359 |
| CDS | 271809 | 271910 |
| CDS | 272534 | 272581 |
| CDS | 273034 | 273318 |
| CDS | 273517 | 273576 |
| CDS | 273658 | 273741 |
| CDS | 273884 | 273949 |
| CDS | 274222 | 274320 |
| CDS | 274463 | 274681 |
| CDS | 275143 | 275230 |
| CDS | 275328 | 275551 |
| CDS | 276312 | 276371 |
| CDS | 276443 | 276556 |
| CDS | 277280 | 277405 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12325.7 | TMF_TATA_bd | 932 | 1055 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.