Gene details

Annotation of co-expression genes

PH01001569G0330's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT5G44200 : 2.40E-56
Blast annotation: CAP-binding protein 20

2.Location

Scaffold: PH01001569
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000599	mRNA_cis_splicing,_via_spliceosome nuclear_cap_binding_complex RNA_cap_binding hydro-lyase activity, fatty acid biosynthetic process, Biotin_metabolism Fatty_acid_biosynthesis

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00076.21	RRM_1	133	203

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Spliceosome	nuclear cap-binding protein subunit 2	ko03041	K12883
RNA transport	nuclear cap-binding protein subunit 2	ko03013	K12883
mRNA surveillance pathway	nuclear cap-binding protein subunit 2	ko03015	K12883

10.Gene Ontology

GO Accession	GO Annotation
GO:0000166	nucleotide binding
GO:0000339	RNA cap binding
GO:0003676	nucleic acid binding
GO:0005846	nuclear cap binding complex
GO:0045292	mRNA cis splicing, via spliceosome

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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