PH01001579G0270's details annotation
1.Annotation
ICBR annotation: CCR4-Not complex component, Not1domain containing protein, expressed
Blast result AT1G02080 : 8.20E-99
Blast annotation: transcription regulators
2.Location
Scaffold: PH01001579
Strand: +
| Region | Start | End |
| gene | 141888 | 152245 |
| mRNA | 141888 | 152245 |
| exon | 141888 | 142042 |
| exon | 142357 | 142393 |
| exon | 142455 | 142532 |
| exon | 142619 | 142735 |
| exon | 143291 | 143417 |
| exon | 143546 | 143647 |
| exon | 144053 | 144153 |
| exon | 144240 | 144368 |
| exon | 144501 | 144581 |
| exon | 145460 | 145606 |
| exon | 145689 | 145826 |
| exon | 146116 | 146168 |
| exon | 146511 | 146556 |
| exon | 146770 | 146817 |
| exon | 146898 | 147044 |
| exon | 147114 | 147175 |
| exon | 149373 | 149454 |
| exon | 149539 | 149643 |
| exon | 149729 | 149860 |
| exon | 150643 | 150735 |
| exon | 150999 | 151247 |
| exon | 151440 | 151541 |
| exon | 151986 | 152245 |
| CDS | 142029 | 142042 |
| CDS | 142357 | 142393 |
| CDS | 142455 | 142532 |
| CDS | 142619 | 142735 |
| CDS | 143291 | 143417 |
| CDS | 143546 | 143647 |
| CDS | 144053 | 144153 |
| CDS | 144240 | 144368 |
| CDS | 144501 | 144581 |
| CDS | 145460 | 145606 |
| CDS | 145689 | 145826 |
| CDS | 146116 | 146168 |
| CDS | 146511 | 146556 |
| CDS | 146770 | 146817 |
| CDS | 146898 | 147044 |
| CDS | 147114 | 147175 |
| CDS | 149373 | 149454 |
| CDS | 149539 | 149643 |
| CDS | 149729 | 149860 |
| CDS | 150643 | 150735 |
| CDS | 150999 | 151247 |
| CDS | 151440 | 151541 |
| CDS | 151986 | 152186 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000625 | |
| coexpression network | CFinderM001278 | protein_kinase_binding ATPase activity, coupled to transmembrane movement of substances, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04054.14 | Not1 | 476 | 590 |
| PF04054.14 | Not1 | 608 | 730 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.