Annotation of co-expression genes

PH01001580G0080's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result AT1G31800 : 8.00E-156
Blast annotation: cytochrome P450, family 97, subfamily A, polypeptide 3

2.Location

Scaffold: PH01001580
Strand: +

RegionStartEnd
gene3845245224
mRNA3845245224
exon3845241205
exon4129441365
exon4144441554
exon4166941860
exon4196742128
exon4222742322
exon4240442505
exon4277642856
exon4293043012
exon4334543351
exon4370143781
exon4385543937
exon4458545224
CDS4109241205
CDS4129441365
CDS4144441554
CDS4166941860
CDS4196742128
CDS4222742322
CDS4240442505
CDS4277642856
CDS4293043012
CDS4334543351
CDS4370143781
CDS4385543937
CDS4458544678

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p45015336
PF00067.21p450341404

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Carotenoid biosynthesiscytochrome P450, family 97, subfamily A (beta-ring hydroko00906K15747

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.