PH01001580G0270's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001580
Strand: -
| Region | Start | End |
| gene | 172717 | 179510 |
| mRNA | 172717 | 179510 |
| exon | 172717 | 173245 |
| exon | 173527 | 173581 |
| exon | 173732 | 175016 |
| exon | 175357 | 175941 |
| exon | 176505 | 176528 |
| exon | 178179 | 178739 |
| exon | 179141 | 179510 |
| CDS | 172882 | 173245 |
| CDS | 173527 | 173581 |
| CDS | 173732 | 175016 |
| CDS | 175357 | 175941 |
| CDS | 176505 | 176528 |
| CDS | 178179 | 178739 |
| CDS | 179141 | 179296 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000316 | RLK-Pelle_RLCK-IV (from iTAK) AGC_NDR (from iTAK) Jumonji Transcription_Regulator(from iTAK) signal transducer activity, |
| coexpression network | CFinderM001123 | 1,3-beta-D-glucan synthase activity, (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, RNA-dependent DNA replication, membrane, RNA-directed DNA polymerase activity, |
| coexpression network | CFinderM001124 | AGC_NDR (from iTAK) Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.