PH01001583G0220's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G16385 : 2.30E-09
Blast annotation: -
2.Location
Scaffold: PH01001583
Strand: -
| Region | Start | End |
| gene | 164689 | 166403 |
| mRNA | 164689 | 166403 |
| exon | 164689 | 165237 |
| exon | 165470 | 165519 |
| exon | 165870 | 166403 |
| CDS | 165103 | 165237 |
| CDS | 165470 | 165519 |
| CDS | 165870 | 165951 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000088 | transferase activity, transferring acyl groups other than amino-acyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) Phenylpropanoid_biosynthesis Phenylalanine_metabolism Methane_metabolism |
| coexpression network | CFinderM000210 | transferase activity, transferring acyl groups other than amino-acyl groups, RLK-Pelle_LRR-XI-1 (from iTAK) RLK-Pelle_L-LEC (from iTAK) RLK-Pelle_LRR-XII-1 (from iTAK) |
| coexpression network | CFinderM000877 | RLK-Pelle_LRR-XII-1 (from iTAK) transferase activity, transferring acyl groups other than amino-acyl groups, Methane_metabolism Phenylalanine_metabolism Phenylpropanoid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.