Annotation of co-expression genes

PH01001584G0330's details annotation

1.Annotation

ICBR annotation: GDSL-like lipase/acylhydrolase, putative, expressed

Blast result AT5G03810 : 2.00E-103
Blast annotation: GDSL-like Lipase/Acylhydrolase family protein

2.Location

Scaffold: PH01001584
Strand: +

RegionStartEnd
gene269974274287
mRNA269974274287
exon269974270351
exon270474270706
exon270747270956
exon271194271196
exon271984271991
exon272834272951
exon273472273724
exon273816274287
CDS270093270351
CDS270474270706
CDS270747270956
CDS271194271196
CDS271984271991
CDS272834272951
CDS273472273724
CDS273816274009

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000056HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_biosynthesis
nucleus,
transition metal ion binding,
acyl-[acyl-carrier-protein] desaturase activity,
fatty acid metabolic process,
lipid biosynthetic process,
sequence-specific DNA binding,
DNA binding,
sequence-specific DNA binding transcription factor activity,
fatty acid biosynthetic process,
YABBY Transcription_Regulator(from PlantTFDB)
C2C2-YABBY Transcription_Regulator(from iTAK)
lipase activity,
Rho GDP-dissociation inhibitor activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings

Created with Highcharts 4.1.6Expression value (FPKM)gene expression profiling among different tissue samplesleaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR1050710100200300255075125150175225250275Highcharts.com

7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00657.21Lipase_GDSL278416

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006629lipid metabolic process
GO:0016298lipase activity
GO:0016787hydrolase activity
GO:0016788hydrolase activity, acting on ester bonds

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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