PH01001585G0130's details annotation
1.Annotation
ICBR annotation: possible lysine decarboxylase domain containing protein, expressed
Blast result AT2G37210 : 3.30E-68
Blast annotation: lysine decarboxylase family protein
2.Location
Scaffold: PH01001585
Strand: -
| Region | Start | End |
| gene | 80731 | 86624 |
| mRNA | 80731 | 86624 |
| exon | 80731 | 81634 |
| exon | 81707 | 81850 |
| exon | 81998 | 82173 |
| exon | 82396 | 82495 |
| exon | 83816 | 83904 |
| exon | 84557 | 84587 |
| exon | 84791 | 84800 |
| exon | 84871 | 84968 |
| exon | 86414 | 86624 |
| CDS | 81566 | 81634 |
| CDS | 81707 | 81850 |
| CDS | 81998 | 82173 |
| CDS | 82396 | 82495 |
| CDS | 83816 | 83904 |
| CDS | 84557 | 84587 |
| CDS | 84791 | 84800 |
| CDS | 84871 | 84968 |
| CDS | 86414 | 86518 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000148 | RLK-Pelle_LRR-VIII-1 (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) protein phosphorylation, C2H2 Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03641.13 | Lysine_decarbox | 52 | 144 |
| PF03641.13 | Lysine_decarbox | 179 | 250 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.