PH01001591G0190's details annotation
1.Annotation
ICBR annotation: copine, putative, expressed
Blast result AT5G61910 : 3.00E-168
Blast annotation: DCD (Development and Cell Death) domain protein
2.Location
Scaffold: PH01001591
Strand: +
| Region | Start | End |
| gene | 152138 | 160071 |
| mRNA | 152138 | 160071 |
| exon | 152138 | 153157 |
| exon | 153205 | 153255 |
| exon | 154554 | 154702 |
| exon | 154823 | 154871 |
| exon | 155435 | 155491 |
| exon | 156064 | 156246 |
| exon | 156395 | 156460 |
| exon | 156792 | 156853 |
| exon | 157032 | 157137 |
| exon | 157208 | 157322 |
| exon | 157432 | 157508 |
| exon | 157605 | 157742 |
| exon | 158030 | 158194 |
| exon | 158275 | 158388 |
| exon | 158695 | 158791 |
| exon | 159013 | 160071 |
| CDS | 153155 | 153157 |
| CDS | 153205 | 153255 |
| CDS | 154554 | 154702 |
| CDS | 154823 | 154871 |
| CDS | 155435 | 155491 |
| CDS | 156064 | 156246 |
| CDS | 156395 | 156460 |
| CDS | 156792 | 156853 |
| CDS | 157032 | 157137 |
| CDS | 157208 | 157322 |
| CDS | 157432 | 157508 |
| CDS | 157605 | 157742 |
| CDS | 158030 | 158194 |
| CDS | 158275 | 158388 |
| CDS | 158695 | 158791 |
| CDS | 159013 | 159107 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000870 | cullin-RING ubiquitin ligase complex, folic acid-containing compound biosynthetic process, methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001222 | aminoacylase activity, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00168.29 | C2 | 16 | 107 |
| PF07002.15 | Copine | 291 | 505 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.