PH01001592G0360's details annotation
1.Annotation
ICBR annotation: proline synthetase co-transcribed bacterial homolog protein, putative, expressed
Blast result AT1G11930 : 1.50E-74
Blast annotation: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
2.Location
Scaffold: PH01001592
Strand: +
| Region | Start | End |
| gene | 208771 | 212109 |
| mRNA | 208771 | 212109 |
| exon | 208771 | 209155 |
| exon | 209435 | 209501 |
| exon | 209848 | 209894 |
| exon | 210303 | 210390 |
| exon | 210666 | 210799 |
| exon | 211761 | 211859 |
| exon | 211950 | 212109 |
| CDS | 209072 | 209155 |
| CDS | 209435 | 209501 |
| CDS | 209848 | 209894 |
| CDS | 210303 | 210390 |
| CDS | 210666 | 210799 |
| CDS | 211761 | 211859 |
| CDS | 211950 | 212027 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01168.19 | Ala_racemase_N | 51 | 191 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.