PH01001593G0400's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G03250 : 7.40E-46
Blast annotation: -
2.Location
Scaffold: PH01001593
Strand: -
| Region | Start | End |
| gene | 251444 | 256351 |
| mRNA | 251444 | 256351 |
| exon | 251444 | 251857 |
| exon | 251963 | 252064 |
| exon | 253348 | 253506 |
| exon | 253652 | 253734 |
| exon | 254291 | 254315 |
| exon | 254595 | 254665 |
| exon | 254750 | 256351 |
| CDS | 251708 | 251857 |
| CDS | 251963 | 252064 |
| CDS | 253348 | 253506 |
| CDS | 253652 | 253734 |
| CDS | 254291 | 254315 |
| CDS | 254595 | 254665 |
| CDS | 254750 | 254816 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001092 | CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases membrane coat, 4-alpha-glucanotransferase activity, starch_binding |
| coexpression network | CFinderM001302 | membrane coat, malic enzyme activity, malate_dehydrogenase_(decarboxylating)_(NAD+)_activity malate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13902.5 | R3H-assoc | 53 | 124 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.