PH01001601G0160's details annotation
1.Annotation
ICBR annotation: NLI interacting factor-like phosphatase, putative, expressed
Blast result AT5G46410 : 6.40E-64
Blast annotation: SCP1-like small phosphatase 4
2.Location
Scaffold: PH01001601
Strand: -
| Region | Start | End |
| gene | 105181 | 108060 |
| mRNA | 105181 | 108060 |
| exon | 105181 | 105636 |
| exon | 106008 | 106345 |
| exon | 106964 | 107506 |
| exon | 107558 | 107660 |
| exon | 107913 | 108060 |
| CDS | 105460 | 105636 |
| CDS | 106008 | 106345 |
| CDS | 106964 | 107506 |
| CDS | 107558 | 107660 |
| CDS | 107913 | 107957 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000414 | RLK-Pelle_LRR-II (from iTAK) protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, TTK (from iTAK) ATP binding, aromatic amino acid family metabolic process, RLK-Pelle_Extensin (from iTAK) magnesium_ion_transport protein serine/threonine kinase activity, RLK-Pelle_LRR-III (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001487 | regulation of sequence-specific DNA binding transcription factor activity, aromatic amino acid family metabolic process, RLK-Pelle_LRR-II (from iTAK) Metabolism_of_xenobiotics_by_cytochrome_P450 Drug_metabolism_-_cytochrome_P450 Basal_transcription_factors Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03031.17 | NIF | 224 | 384 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.