PH01001601G0380's details annotation
1.Annotation
ICBR annotation: late embryogenesis abundant protein, putative, expressed
Blast result AT1G01470 : 1.40E-49
Blast annotation: Late embryogenesis abundant protein
2.Location
Scaffold: PH01001601
Strand: -
| Region | Start | End |
| gene | 212220 | 214289 |
| mRNA | 212220 | 214289 |
| exon | 212220 | 212839 |
| exon | 212978 | 214289 |
| CDS | 212590 | 212839 |
| CDS | 212978 | 213183 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000467 | response to desiccation, regulation of transcription, DNA-dependent, C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) ERF Transcription_Regulator(from PlantTFDB) AP2/ERF-ERF Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001169 | response to desiccation, Dof Transcription_Regulator(from PlantTFDB) C2C2-Dof Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001393 | nuclear origin of replication recognition complex, response to desiccation, Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, protein dephosphorylation, DNA_replication |
| coexpression network | CFinderM001416 | nuclear origin of replication recognition complex, response to desiccation, DNA binding, Dof Transcription_Regulator(from PlantTFDB) C2C2-Dof Transcription_Regulator(from iTAK) DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03168.12 | LEA_2 | 45 | 140 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009269 | response to desiccation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.