Annotation of co-expression genes

PH01001603G0300's details annotation

1.Annotation

ICBR annotation: galactosyltransferase, putative, expressed

Blast result AT1G77810 : 3.00E-133
Blast annotation: Galactosyltransferase family protein

2.Location

Scaffold: PH01001603
Strand: +

RegionStartEnd
gene164942171324
mRNA164942171324
exon164942167473
exon168330168429
exon168512168570
exon168679168881
exon169353169416
exon169972170044
exon170141170283
exon170545170670
exon170747170856
exon170946171324
CDS167367167473
CDS168330168429
CDS168512168570
CDS168679168881
CDS169353169416
CDS169972170044
CDS170141170283
CDS170545170670
CDS170747170856
CDS170946171094

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13334.5DUF409419108
PF01762.20Galactosyl_T144242
PF01762.20Galactosyl_T253318

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006486protein glycosylation
GO:0008378galactosyltransferase activity
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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