PH01001604G0080's details annotation
1.Annotation
ICBR annotation: transferase family protein, putative, expressed
Blast result AT5G48930 : 4.40E-58
Blast annotation: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
2.Location
Scaffold: PH01001604
Strand: +
| Region | Start | End |
| gene | 71141 | 73706 |
| mRNA | 71141 | 73706 |
| exon | 71141 | 71838 |
| exon | 71918 | 73706 |
| CDS | 71428 | 71838 |
| CDS | 71918 | 72802 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02458.14 | Transferase | 1 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.