PH01001605G0350's details annotation
1.Annotation
ICBR annotation: growth regulating factor protein, putative, expressed
Blast result AT2G22840 : 1.60E-50
Blast annotation: growth-regulating factor 1
2.Location
Scaffold: PH01001605
Strand: +
| Region | Start | End |
| gene | 262844 | 268296 |
| mRNA | 262844 | 268296 |
| exon | 262844 | 263062 |
| exon | 263153 | 263293 |
| exon | 263668 | 263804 |
| exon | 264218 | 264591 |
| exon | 264722 | 264820 |
| exon | 265952 | 266594 |
| exon | 267350 | 267490 |
| exon | 267560 | 268296 |
| CDS | 262966 | 263062 |
| CDS | 263153 | 263293 |
| CDS | 263668 | 263804 |
| CDS | 264218 | 264591 |
| CDS | 264722 | 264820 |
| CDS | 265952 | 266594 |
| CDS | 267350 | 267490 |
| CDS | 267560 | 267583 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000299 | nucleus, B3-ARF Transcription_Regulator(from iTAK) RLK-Pelle_Extensin (from iTAK) ARF Transcription_Regulator(from PlantTFDB) GRF Transcription_Regulator(from PlantTFDB) AGC_RSK-2 (from iTAK) regulation of transcription, DNA-dependent, Nucleotide_excision_repair DNA_replication Mismatch_repair Homologous_recombination regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity response to hormone stimulus, DNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRF |
| Transcription_Regulator(from PlantTFDB) | GRF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08880.10 | QLQ | 101 | 126 |
| PF08879.9 | WRC | 155 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.