Annotation of co-expression genes

PH01001608G0070's details annotation

1.Annotation

ICBR annotation: S-domain receptor-like protein kinase, putative, expressed

Blast result AT4G00340 : 2.00E-147
Blast annotation: receptor-like protein kinase 4

2.Location

Scaffold: PH01001608
Strand: -

RegionStartEnd
gene4436046898
mRNA4436046898
exon4436046898
CDS4440946811

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000288RLK-Pelle_DLSV (from iTAK)
protein serine/threonine kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein kinase activity,
protein phosphorylation,
ATP binding,
GH17 Glycoside_Hydrolases
RLK-Pelle_SD-2b (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01453.23B_lectin75182
PF00954.19S_locus_glycop213326
PF08276.10PAN_2357415
PF00069.24Pkinase504765

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0048544recognition of pollen

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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