PH01001613G0150's details annotation
1.Annotation
ICBR annotation: NBS-LRR disease resistance protein, putative, expressed
Blast result AT3G14470 : 9.90E-62
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01001613
Strand: +
| Region | Start | End |
| gene | 123507 | 132612 |
| mRNA | 123507 | 132612 |
| exon | 123507 | 124090 |
| exon | 124393 | 125541 |
| exon | 128406 | 130607 |
| exon | 131140 | 132612 |
| CDS | 123830 | 124090 |
| CDS | 124393 | 125541 |
| CDS | 128406 | 130607 |
| CDS | 131140 | 132324 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000988 | ADP_binding defense response, tryptophanyl-tRNA aminoacylation, tryptophan-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 157 | 442 |
| PF00560.32 | LRR_1 | 556 | 573 |
| PF00560.32 | LRR_1 | 602 | 624 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.